Re: Improve PostGIS performance with 62 million rows?

From: Paul Ramsey <pramsey(at)cleverelephant(dot)ca>
To: Israel Brewster <israel(at)ravnalaska(dot)net>
Cc: pgsql-general <pgsql-general(at)postgresql(dot)org>
Subject: Re: Improve PostGIS performance with 62 million rows?
Date: 2017-01-05 19:38:38
Message-ID: CACowWR1k839jZiOaEDjF7Dea53SUkMa6kGN25y7n=LbTi2JuxA@mail.gmail.com
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Yes, you did. You want a query that spits out a tupleset of goemetries (one
each for each wee segment), and then you can join that set to your main
table using st_dwithin() as the join clause.
So start by ditching the main table and just work on a query that generates
a pile of wee segments.

On Thu, Jan 5, 2017 at 11:36 AM, Israel Brewster <israel(at)ravnalaska(dot)net>
wrote:

> On Jan 5, 2017, at 8:50 AM, Paul Ramsey <pramsey(at)cleverelephant(dot)ca> wrote:
>
>
> The index filters using bounding boxes. A long, diagonal route will have
> a large bounding box, relative to the area you actually care about (within
> a narrow strip of the route). Use ST_Segmentize() to add points to your
> route, ST_DumpPoints() to dump those out as point and ST_MakeLine to
> generate new lines from those points, each line very short. The maximum
> index effectiveness will come when your line length is close to your buffer
> width.
>
> P
>
>
> Ok, I think I understand the concept. So attempting to follow your advice,
> I modified the query to be:
>
> SELECT elevation
> FROM data
> WHERE
> ST_DWithin(
> location,
> (SELECT ST_MakeLine(geom)::geography as split_line
> FROM (SELECT
> (ST_DumpPoints(
> ST_Segmentize(
> ST_GeographyFromText('SRID=4326;LINESTRING(-150.008056
> 61.179167,-156.77 71.285833)'),
> 600
> )::geometry
> )).geom
> ) s1),
> 600
> )
> ORDER BY elevation DESC limit 1;
>
> It took some fiddling to find a syntax that Postgresql would accept, but
> eventually that's what I came up with. Unfortunately, far from improving
> performance, it killed it - in running the query, it went from 22 seconds
> to several minutes (EXPLAIn ANALYZE has yet to return a result). Looking at
> the query execution plan shows, at least partially, why:
>
> QUERY PLAN
>
> ------------------------------------------------------------
> ------------------
> Limit (cost=17119748.98..17119748.98 rows=1 width=4)
> InitPlan 1 (returns $0)
> -> Aggregate (cost=17.76..17.77 rows=1 width=32)
> -> Result (cost=0.00..5.25 rows=1000 width=32)
> -> Sort (cost=17119731.21..17171983.43 rows=20900890 width=4)
> Sort Key: data.elevation DESC
> -> Seq Scan on data (cost=0.00..17015226.76 rows=20900890
> width=4)
> Filter: st_dwithin(location, $0, '600'::double precision)
> (8 rows)
>
> So apparently it is now doing a sequential scan on data rather than using
> the index. And, of course, sorting 20 million rows is not trivial either.
> Did I do something wrong with forming the query?
>
> -----------------------------------------------
> Israel Brewster
> Systems Analyst II
> Ravn Alaska
> 5245 Airport Industrial Rd
> Fairbanks, AK 99709
> (907) 450-7293
> -----------------------------------------------
>
>
> On Thu, Jan 5, 2017 at 9:45 AM, Israel Brewster <israel(at)ravnalaska(dot)net>
> wrote:
>
>> I have a database (PostgreSQL 9.6.1) containing 62,702,675 rows of
>> latitude (numeric), longitude(numeric), elevation(integer) data, along with
>> a PostGIS (2.3.0) geometry column (location), running on a CentOS 6.8 box
>> with 64GB RAM and a RAID10 SSD data drive. I'm trying to get the maximum
>> elevation along a path, for which purpose I've come up with the following
>> query (for one particular path example):
>>
>> SELECT elevation FROM data
>>
>>
>>
>>
>> WHERE ST_DWithin(location, ST_GeographyFromText('SRID=4326;LINESTRING(-150.008056
>> 61.179167,-156.77 71.285833)'), 600)
>>
>>
>>
>> ORDER BY elevation LIMIT 1;
>>
>> The EXPLAIN ANALYZE output of this particular query (
>> https://explain.depesz.com/s/heZ) shows:
>>
>>
>>
>> QUERY PLAN
>>
>>
>> ------------------------------------------------------------
>> ------------------------------------------------------------
>> ------------------------------------------------------------
>> ------------------------------------------------------------
>> ------------------------------------------------------------
>> ------------------------------------------
>> Limit (cost=4.83..4.83 rows=1 width=4) (actual
>> time=22653.840..22653.842 rows=1 loops=1)
>> -> Sort (cost=4.83..4.83 rows=1 width=4) (actual
>> time=22653.837..22653.837 rows=1 loops=1)
>> Sort Key: elevation DESC
>> Sort Method: top-N heapsort Memory: 25kB
>> -> Index Scan using location_gix on data (cost=0.42..4.82
>> rows=1 width=4) (actual time=15.786..22652.041 rows=11081 loops=1)
>> Index Cond: (location && '0102000020E6100000020000002C1
>> 1A8FE41C062C0DFC2BAF1EE964E40713D0AD7A39863C086C77E164BD2514
>> 0'::geography)
>> Filter: (('0102000020E6100000020000002
>> C11A8FE41C062C0DFC2BAF1EE964E40713D0AD7A39863C086C77E164BD25140'::geography
>> && _st_expand(location, '600'::double precision)) AND
>> _st_dwithin(location, '0102000020E6100000020000002C11A8FE41C
>> 062C0DFC2BAF1EE964E40713D0AD7A39863C086C77E164BD25140'::geography,
>> '600'::double precision, true))
>> Rows Removed by Filter: 4934534
>> Planning time: 0.741 ms
>> Execution time: 22653.906 ms
>> (10 rows)
>>
>> So it is using the index properly, but still takes a good 22 seconds to
>> run, most of which appears to be in the Index Scan.
>>
>> Is there any way to improve this, or is this going to be about as good as
>> it gets with the number of rows being dealt with? I was planning to use
>> this for a real-time display - punch in a couple of points, get some
>> information about the route between, including maximum elevation - but with
>> it taking 22 seconds for the longer routes at least, that doesn't make for
>> the best user experience.
>>
>> It's perhaps worth noting that the example above is most likely a worst
>> case scenario. I would expect the vast majority of routes to be
>> significantly shorter, and I want to say the shorter routes query much
>> faster [testing needed]. That said, the faster the better, even for short
>> routes :-)
>> -----------------------------------------------
>> Israel Brewster
>> Systems Analyst II
>> Ravn Alaska
>> 5245 Airport Industrial Rd
>> Fairbanks, AK 99709
>> (907) 450-7293
>> -----------------------------------------------
>>
>>
>>
>>
>>
>>
>
>

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